Command line: [exonerate -m p2g --showtargetgff --exhaustive yes -q proteina.fa -t GPx2_Human.1.subseq.fa]
Hostname: [ws101162]

C4 Alignment:
------------
         Query: GPx2_Human
        Target: KI537886.1:subseq(2103352,200422) Balaenoptera acutorostrata scammoni unplaced genomic scaffold scaffold33, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 983
   Query range: 0 -> 190
  Target range: 102928 -> 99999

      1 : MetAlaPheIleAlaLysSerPheTyrAspLeuSerAlaIleSerLeuAspGlyGluL :     20
          ||||||!:!|||||||||||||||||||||||||||||||||||||||||||||||||
          MetAlaTyrIleAlaLysSerPheTyrAspLeuSerAlaIleSerLeuAspGlyGluL
 102928 : ATGGCTTACATTGCCAAGTCCTTCTACGACCTCAGTGCTATCAGCCTGGATGGGGAGA : 102871

     21 : ysValAspPheAsnThrPheArgGlyArgAlaValLeuIleGluAsnValAlaSerLe :     39
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ysValAspPheAsnThrPheArgGlyArgAlaValLeuIleGluAsnValAlaSerLe
 102870 : AGGTAGATTTCAACACATTCCGAGGCAGGGCAGTGCTGATTGAGAACGTGGCCTCGCT : 102814

     40 : uUnkGlyThrThrThrArgAspPheThrGlnLeuAsnGluLeuGlnCysArgPhePro :     58
          |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
          u***GlyThrThrThrArgAspPheThrGlnLeuAsnGluLeuGlnCysArgPhePro
 102813 : CTGAGGCACAACCACCCGGGACTTCACCCAACTCAACGAGCTGCAATGCCGCTTTCCC : 102757

     59 : ArgArgLeuValValLeuGlyPheProCysAsnGlnPheGlyHisGln  >>>> Tar :     75
          ||||||||||||||||||||||||||||||||||||||||||||||||          
          ArgArgLeuValValLeuGlyPheProCysAsnGlnPheGlyHisGln++        
 102756 : AGACGCCTGGTGGTTCTTGGCTTCCCTTGCAACCAATTTGGACATCAGgt........ : 102704

     76 : get Intron 1 >>>>  GluAsnCysGlnAsnGluGluIleLeuAsnSerLeuLys :     87
           2359 bp           |||||||||||||||||||||||||||||||||||||||
                           ++GluAsnCysGlnAsnGluGluIleLeuAsnSerLeuLys
 102703 : .................agGAGAACTGTCAGAATGAGGAGATCCTGAACAGCCTCAAG : 100311

     88 : TyrValArgProGlyGlyGlyTyrGlnProThrPheThrLeuValGlnLysCysGluV :    107
          |||||||||||||||||||||!:!||||||||||||||||||:!!|||||||||!!:|
          TyrValArgProGlyGlyGlyPheGlnProThrPheThrLeuIleGlnLysCysAspV
 100310 : TACGTCCGCCCTGGGGGTGGATTCCAGCCCACCTTTACCCTTATCCAAAAGTGTGACG : 100251

    108 : alAsnGlyGlnAsnGluHisProValPheAlaTyrLeuLysAspLysLeuProTyrPr :    126
          |||||||||||||||||||||||||||||.!!||||||||||||||||||||||||||
          alAsnGlyGlnAsnGluHisProValPheThrTyrLeuLysAspLysLeuProTyrPr
 100250 : TGAATGGTCAGAATGAGCATCCTGTCTTCACCTACCTGAAGGATAAGCTCCCCTACCC : 100194

    127 : oTyrAspAspProPheSerLeuMetThrAspProLysLeuIleIleTrpSerProVal :    145
          |||||||||||||||||||||||||||||||||||||!!!||||||||||||||||||
          oTyrAspAspProPheSerLeuMetThrAspProLysPheIleIleTrpSerProVal
 100193 : TTACGACGACCCATTTTCCCTCATGACCGATCCCAAGTTCATCATTTGGAGCCCTGTG : 100137

    146 : ArgArgSerAspValAlaTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluP :    165
          !.!||||||||||||:!!||||||||||||||||||||||||||||||||||||||||
          HisArgSerAspValSerTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluP
 100136 : CACCGCTCAGACGTGTCTTGGAACTTTGAGAAGTTCCTCATCGGGCCAGAGGGGGAAC : 100077

    166 : roPheArgArgTyrSerArgThrPheProThrIleAsnIleGluProAspIleLysAr :    184
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          roPheArgArgTyrSerArgThrPheProThrIleAsnIleGluProAspIleLysAr
 100076 : CCTTTCGGCGCTACAGCCGCACCTTCCCAACCATCAACATCGAGCCGGACATCAAGCG : 100020

    185 : gLeuLeuLysValAlaIle :    190
          |||||||||||||||||||
          gLeuLeuLysValAlaIle
 100019 : CCTCCTCAAAGTTGCCATA : 100000

vulgar: GPx2_Human 0 190 . KI537886.1:subseq(2103352,200422) 102928 99999 - 983 M 74 222 5 0 2 I 0 2355 3 0 2 M 116 348
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-20
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KI537886.1:subseq(2103352,200422)	exonerate:protein2genome:local	gene	100000	102928	983	-	.	gene_id 1 ; sequence GPx2_Human ; gene_orientation +
KI537886.1:subseq(2103352,200422)	exonerate:protein2genome:local	cds	102707	102928	.	-	.	
KI537886.1:subseq(2103352,200422)	exonerate:protein2genome:local	exon	102707	102928	.	-	.	insertions 0 ; deletions 0
KI537886.1:subseq(2103352,200422)	exonerate:protein2genome:local	splice5	102705	102706	.	-	.	intron_id 1 ; splice_site "GT"
KI537886.1:subseq(2103352,200422)	exonerate:protein2genome:local	intron	100348	102706	.	-	.	intron_id 1
KI537886.1:subseq(2103352,200422)	exonerate:protein2genome:local	splice3	100348	100349	.	-	.	intron_id 0 ; splice_site "AG"
KI537886.1:subseq(2103352,200422)	exonerate:protein2genome:local	cds	100000	100347	.	-	.	
KI537886.1:subseq(2103352,200422)	exonerate:protein2genome:local	exon	100000	100347	.	-	.	insertions 0 ; deletions 0
KI537886.1:subseq(2103352,200422)	exonerate:protein2genome:local	similarity	100000	102928	983	-	.	alignment_id 1 ; Query GPx2_Human ; Align 102929 1 222 ; Align 100348 75 348
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
